| GO | Name |
| GO:0000122 | negative regulation of transcription by RNA polymerase II |
| GO:0000785 | chromatin |
| GO:0000976 | transcription cis-regulatory region binding |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0000987 | cis-regulatory region sequence-specific DNA binding |
| GO:0001223 | transcription coactivator binding |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific |
| GO:0001501 | skeletal system development |
| GO:0001649 | osteoblast differentiation |
| GO:0001657 | ureteric bud development |
| GO:0001666 | response to hypoxia |
| GO:0001701 | in utero embryonic development |
| GO:0001707 | mesoderm formation |
| GO:0001756 | somitogenesis |
| GO:0001889 | liver development |
| GO:0001947 | heart looping |
| GO:0002076 | osteoblast development |
| GO:0002520 | immune system development |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
| GO:0003690 | double-stranded DNA binding |
| GO:0003700 | DNA-binding transcription factor activity |
| GO:0005160 | transforming growth factor beta receptor binding |
| GO:0005518 | collagen binding |
| GO:0005634 | nucleus |
| GO:0005637 | nuclear inner membrane |
| GO:0005654 | nucleoplasm |
| GO:0005667 | transcription regulator complex |
| GO:0005737 | cytoplasm |
| GO:0005829 | cytosol |
| GO:0005886 | plasma membrane |
| GO:0006357 | regulation of transcription by RNA polymerase II |
| GO:0006366 | transcription by RNA polymerase II |
| GO:0006919 | activation of cysteine-type endopeptidase activity involved in apoptotic process |
| GO:0006955 | immune response |
| GO:0007179 | transforming growth factor beta receptor signaling pathway |
| GO:0007183 | SMAD protein complex assembly |
| GO:0007369 | gastrulation |
| GO:0007492 | endoderm development |
| GO:0008013 | beta-catenin binding |
| GO:0008134 | transcription factor binding |
| GO:0008270 | zinc ion binding |
| GO:0008285 | negative regulation of cell population proliferation |
| GO:0009653 | anatomical structure morphogenesis |
| GO:0009880 | embryonic pattern specification |
| GO:0010628 | positive regulation of gene expression |
| GO:0010694 | positive regulation of alkaline phosphatase activity |
| GO:0010718 | positive regulation of epithelial to mesenchymal transition |
| GO:0016202 | regulation of striated muscle tissue development |
| GO:0017015 | regulation of transforming growth factor beta receptor signaling pathway |
| GO:0017151 | DEAD/H-box RNA helicase binding |
| GO:0019899 | enzyme binding |
| GO:0019901 | protein kinase binding |
| GO:0019902 | phosphatase binding |
| GO:0023019 | signal transduction involved in regulation of gene expression |
| GO:0030154 | cell differentiation |
| GO:0030308 | negative regulation of cell growth |
| GO:0030325 | adrenal gland development |
| GO:0030335 | positive regulation of cell migration |
| GO:0030501 | positive regulation of bone mineralization |
| GO:0030509 | BMP signaling pathway |
| GO:0030878 | thyroid gland development |
| GO:0031490 | chromatin DNA binding |
| GO:0031625 | ubiquitin protein ligase binding |
| GO:0031962 | mineralocorticoid receptor binding |
| GO:0032332 | positive regulation of chondrocyte differentiation |
| GO:0032731 | positive regulation of interleukin-1 beta production |
| GO:0032909 | regulation of transforming growth factor beta2 production |
| GO:0032916 | positive regulation of transforming growth factor beta3 production |
| GO:0032924 | activin receptor signaling pathway |
| GO:0032991 | protein-containing complex |
| GO:0033689 | negative regulation of osteoblast proliferation |
| GO:0035259 | glucocorticoid receptor binding |
| GO:0038092 | nodal signaling pathway |
| GO:0042110 | T cell activation |
| GO:0042177 | negative regulation of protein catabolic process |
| GO:0042802 | identical protein binding |
| GO:0042803 | protein homodimerization activity |
| GO:0043066 | negative regulation of apoptotic process |
| GO:0043130 | ubiquitin binding |
| GO:0043235 | receptor complex |
| GO:0043425 | bHLH transcription factor binding |
| GO:0043565 | sequence-specific DNA binding |
| GO:0045216 | cell-cell junction organization |
| GO:0045429 | positive regulation of nitric oxide biosynthetic process |
| GO:0045599 | negative regulation of fat cell differentiation |
| GO:0045668 | negative regulation of osteoblast differentiation |
| GO:0045893 | positive regulation of transcription, DNA-templated |
| GO:0045930 | negative regulation of mitotic cell cycle |
| GO:0045944 | positive regulation of transcription by RNA polymerase II |
| GO:0046332 | SMAD binding |
| GO:0048340 | paraxial mesoderm morphogenesis |
| GO:0048589 | developmental growth |
| GO:0048617 | embryonic foregut morphogenesis |
| GO:0048701 | embryonic cranial skeleton morphogenesis |
| GO:0050678 | regulation of epithelial cell proliferation |
| GO:0050728 | negative regulation of inflammatory response |
| GO:0050776 | regulation of immune response |
| GO:0050821 | protein stabilization |
| GO:0050927 | positive regulation of positive chemotaxis |
| GO:0051098 | regulation of binding |
| GO:0051481 | negative regulation of cytosolic calcium ion concentration |
| GO:0051496 | positive regulation of stress fiber assembly |
| GO:0051894 | positive regulation of focal adhesion assembly |
| GO:0060039 | pericardium development |
| GO:0060290 | transdifferentiation |
| GO:0060395 | SMAD protein signal transduction |
| GO:0061045 | negative regulation of wound healing |
| GO:0061767 | negative regulation of lung blood pressure |
| GO:0070306 | lens fiber cell differentiation |
| GO:0070410 | co-SMAD binding |
| GO:0070411 | I-SMAD binding |
| GO:0070412 | R-SMAD binding |
| GO:0071141 | SMAD protein complex |
| GO:0071144 | heteromeric SMAD protein complex |
| GO:0071560 | cellular response to transforming growth factor beta stimulus |
| GO:0090263 | positive regulation of canonical Wnt signaling pathway |
| GO:0097191 | extrinsic apoptotic signaling pathway |
| GO:0097296 | activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway |
| GO:1901203 | positive regulation of extracellular matrix assembly |
| GO:1902895 | positive regulation of pri-miRNA transcription by RNA polymerase II |
| GO:1903243 | negative regulation of cardiac muscle hypertrophy in response to stress |