| GO | Name |
| GO:0000122 | negative regulation of transcription by RNA polymerase II |
| GO:0000976 | transcription cis-regulatory region binding |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific |
| GO:0001501 | skeletal system development |
| GO:0001649 | osteoblast differentiation |
| GO:0001701 | in utero embryonic development |
| GO:0001822 | kidney development |
| GO:0002009 | morphogenesis of an epithelium |
| GO:0002062 | chondrocyte differentiation |
| GO:0002076 | osteoblast development |
| GO:0003682 | chromatin binding |
| GO:0003700 | DNA-binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0005654 | nucleoplasm |
| GO:0005730 | nucleolus |
| GO:0005737 | cytoplasm |
| GO:0005829 | cytosol |
| GO:0005929 | cilium |
| GO:0005930 | axoneme |
| GO:0006357 | regulation of transcription by RNA polymerase II |
| GO:0007224 | smoothened signaling pathway |
| GO:0007389 | pattern specification process |
| GO:0007411 | axon guidance |
| GO:0007418 | ventral midline development |
| GO:0007442 | hindgut morphogenesis |
| GO:0007507 | heart development |
| GO:0008134 | transcription factor binding |
| GO:0008270 | zinc ion binding |
| GO:0008284 | positive regulation of cell population proliferation |
| GO:0009913 | epidermal cell differentiation |
| GO:0009952 | anterior/posterior pattern specification |
| GO:0009953 | dorsal/ventral pattern formation |
| GO:0009954 | proximal/distal pattern formation |
| GO:0016020 | membrane |
| GO:0016607 | nuclear speck |
| GO:0021508 | floor plate formation |
| GO:0021513 | spinal cord dorsal/ventral patterning |
| GO:0021517 | ventral spinal cord development |
| GO:0021522 | spinal cord motor neuron differentiation |
| GO:0021696 | cerebellar cortex morphogenesis |
| GO:0021775 | smoothened signaling pathway involved in ventral spinal cord interneuron specification |
| GO:0021776 | smoothened signaling pathway involved in spinal cord motor neuron cell fate specification |
| GO:0021904 | dorsal/ventral neural tube patterning |
| GO:0021915 | neural tube development |
| GO:0021938 | smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation |
| GO:0021965 | spinal cord ventral commissure morphogenesis |
| GO:0021983 | pituitary gland development |
| GO:0030154 | cell differentiation |
| GO:0030324 | lung development |
| GO:0030879 | mammary gland development |
| GO:0030902 | hindbrain development |
| GO:0031069 | hair follicle morphogenesis |
| GO:0031514 | motile cilium |
| GO:0032331 | negative regulation of chondrocyte differentiation |
| GO:0035295 | tube development |
| GO:0042475 | odontogenesis of dentin-containing tooth |
| GO:0042733 | embryonic digit morphogenesis |
| GO:0043066 | negative regulation of apoptotic process |
| GO:0043565 | sequence-specific DNA binding |
| GO:0045666 | positive regulation of neuron differentiation |
| GO:0045740 | positive regulation of DNA replication |
| GO:0045879 | negative regulation of smoothened signaling pathway |
| GO:0045893 | positive regulation of transcription, DNA-templated |
| GO:0045944 | positive regulation of transcription by RNA polymerase II |
| GO:0048566 | embryonic digestive tract development |
| GO:0048589 | developmental growth |
| GO:0048646 | anatomical structure formation involved in morphogenesis |
| GO:0048666 | neuron development |
| GO:0048754 | branching morphogenesis of an epithelial tube |
| GO:0048856 | anatomical structure development |
| GO:0060032 | notochord regression |
| GO:0060322 | head development |
| GO:0060513 | prostatic bud formation |
| GO:0060603 | mammary gland duct morphogenesis |
| GO:0060831 | smoothened signaling pathway involved in dorsal/ventral neural tube patterning |
| GO:0071407 | cellular response to organic cyclic compound |
| GO:0090103 | cochlea morphogenesis |
| GO:0097542 | ciliary tip |
| GO:0098586 | cellular response to virus |
| GO:1901620 | regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning |
| GO:1990837 | sequence-specific double-stranded DNA binding |
| GO:1990841 | promoter-specific chromatin binding |