| GO | Name |
| GO:0000228 | nuclear chromosome |
| GO:0000932 | P-body |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO:0001650 | fibrillar center |
| GO:0001651 | dense fibrillar component |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
| GO:0003690 | double-stranded DNA binding |
| GO:0003697 | single-stranded DNA binding |
| GO:0003917 | DNA topoisomerase type I (single strand cut, ATP-independent) activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0005634 | nucleus |
| GO:0005654 | nucleoplasm |
| GO:0005730 | nucleolus |
| GO:0005737 | cytoplasm |
| GO:0006260 | DNA replication |
| GO:0006265 | DNA topological change |
| GO:0006338 | chromatin remodeling |
| GO:0007059 | chromosome segregation |
| GO:0009303 | rRNA transcription |
| GO:0018105 | peptidyl-serine phosphorylation |
| GO:0019904 | protein domain specific binding |
| GO:0031490 | chromatin DNA binding |
| GO:0032922 | circadian regulation of gene expression |
| GO:0032993 | protein-DNA complex |
| GO:0040016 | embryonic cleavage |
| GO:0042493 | response to drug |
| GO:0043204 | perikaryon |
| GO:0044877 | protein-containing complex binding |
| GO:0097100 | supercoiled DNA binding |