| GO | Name |
| GO:0000122 | negative regulation of transcription by RNA polymerase II |
| GO:0000785 | chromatin |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0001570 | vasculogenesis |
| GO:0001707 | mesoderm formation |
| GO:0001708 | cell fate specification |
| GO:0001756 | somitogenesis |
| GO:0001839 | neural plate morphogenesis |
| GO:0001843 | neural tube closure |
| GO:0003007 | heart morphogenesis |
| GO:0003257 | positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation |
| GO:0005634 | nucleus |
| GO:0005654 | nucleoplasm |
| GO:0005737 | cytoplasm |
| GO:0006357 | regulation of transcription by RNA polymerase II |
| GO:0007341 | penetration of zona pellucida |
| GO:0007498 | mesoderm development |
| GO:0007509 | mesoderm migration involved in gastrulation |
| GO:0008284 | positive regulation of cell population proliferation |
| GO:0009653 | anatomical structure morphogenesis |
| GO:0009952 | anterior/posterior pattern specification |
| GO:0014028 | notochord formation |
| GO:0022414 | reproductive process |
| GO:0023019 | signal transduction involved in regulation of gene expression |
| GO:0030903 | notochord development |
| GO:0036342 | post-anal tail morphogenesis |
| GO:0043433 | negative regulation of DNA-binding transcription factor activity |
| GO:0043565 | sequence-specific DNA binding |
| GO:0045944 | positive regulation of transcription by RNA polymerase II |
| GO:0048706 | embryonic skeletal system development |
| GO:0055007 | cardiac muscle cell differentiation |
| GO:0060349 | bone morphogenesis |
| GO:0060395 | SMAD protein signal transduction |
| GO:0061371 | determination of heart left/right asymmetry |
| GO:0071300 | cellular response to retinoic acid |
| GO:1990837 | sequence-specific double-stranded DNA binding |