| GO | Name |
| GO:0000122 | negative regulation of transcription by RNA polymerase II |
| GO:0000400 | four-way junction DNA binding |
| GO:0000724 | double-strand break repair via homologous recombination |
| GO:0000785 | chromatin |
| GO:0000976 | transcription cis-regulatory region binding |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0000987 | cis-regulatory region sequence-specific DNA binding |
| GO:0001227 | DNA-binding transcription repressor activity, RNA polymerase II-specific |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
| GO:0003700 | DNA-binding transcription factor activity |
| GO:0003723 | RNA binding |
| GO:0005634 | nucleus |
| GO:0005654 | nucleoplasm |
| GO:0005667 | transcription regulator complex |
| GO:0005677 | chromatin silencing complex |
| GO:0005737 | cytoplasm |
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0006357 | regulation of transcription by RNA polymerase II |
| GO:0006403 | RNA localization |
| GO:0006974 | cellular response to DNA damage stimulus |
| GO:0007283 | spermatogenesis |
| GO:0009952 | anterior/posterior pattern specification |
| GO:0010225 | response to UV-C |
| GO:0010467 | gene expression |
| GO:0010628 | positive regulation of gene expression |
| GO:0010629 | negative regulation of gene expression |
| GO:0016363 | nuclear matrix |
| GO:0030183 | B cell differentiation |
| GO:0031011 | Ino80 complex |
| GO:0031519 | PcG protein complex |
| GO:0032688 | negative regulation of interferon-beta production |
| GO:0034644 | cellular response to UV |
| GO:0034696 | response to prostaglandin F |
| GO:0043565 | sequence-specific DNA binding |
| GO:0045944 | positive regulation of transcription by RNA polymerase II |
| GO:0046332 | SMAD binding |
| GO:0046872 | metal ion binding |
| GO:0048468 | cell development |
| GO:0048593 | camera-type eye morphogenesis |
| GO:0051276 | chromosome organization |
| GO:0061052 | negative regulation of cell growth involved in cardiac muscle cell development |
| GO:0071347 | cellular response to interleukin-1 |
| GO:0071707 | immunoglobulin heavy chain V-D-J recombination |
| GO:1902894 | negative regulation of pri-miRNA transcription by RNA polymerase II |
| GO:1990837 | sequence-specific double-stranded DNA binding |