| Domain | Name | Category | Type |
| IPR009060 | UBA-like superfamily | Family | Homologous superfamily |
| IPR009543 | Vacuolar protein sorting-associated protein 13, SHR-binding domain | Domain | Domain |
| IPR015940 | Ubiquitin-associated domain | Domain | Domain |
| IPR026847 | Vacuolar protein sorting-associated protein 13 | Family | Family |
| IPR026854 | Vacuolar protein sorting-associated protein 13-like, N-terminal domain | Domain | Domain |
| IPR031642 | VPS13, repeated coiled region | Domain | Domain |
| IPR031645 | Vacuolar protein sorting-associated protein 13, C-terminal | Domain | Domain |
| IPR031646 | Vacuolar protein sorting-associated protein 13, second N-terminal domain | Domain | Domain |
| IPR041969 | Vacuolar protein sorting-associated protein 13D, UBA domain | Domain | Domain |