| GO | Name |
| GO:0000122 | negative regulation of transcription by RNA polymerase II |
| GO:0000785 | chromatin |
| GO:0000976 | transcription cis-regulatory region binding |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0001223 | transcription coactivator binding |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific |
| GO:0001541 | ovarian follicle development |
| GO:0001658 | branching involved in ureteric bud morphogenesis |
| GO:0001666 | response to hypoxia |
| GO:0001701 | in utero embryonic development |
| GO:0001702 | gastrulation with mouth forming second |
| GO:0003148 | outflow tract septum morphogenesis |
| GO:0003161 | cardiac conduction system development |
| GO:0003190 | atrioventricular valve formation |
| GO:0003198 | epithelial to mesenchymal transition involved in endocardial cushion formation |
| GO:0003220 | left ventricular cardiac muscle tissue morphogenesis |
| GO:0003251 | positive regulation of cell proliferation involved in heart valve morphogenesis |
| GO:0003360 | brainstem development |
| GO:0003682 | chromatin binding |
| GO:0005518 | collagen binding |
| GO:0005634 | nucleus |
| GO:0005654 | nucleoplasm |
| GO:0005667 | transcription regulator complex |
| GO:0005737 | cytoplasm |
| GO:0005813 | centrosome |
| GO:0005829 | cytosol |
| GO:0006879 | cellular iron ion homeostasis |
| GO:0007179 | transforming growth factor beta receptor signaling pathway |
| GO:0007183 | SMAD protein complex assembly |
| GO:0007283 | spermatogenesis |
| GO:0007338 | single fertilization |
| GO:0007411 | axon guidance |
| GO:0008283 | cell population proliferation |
| GO:0008285 | negative regulation of cell population proliferation |
| GO:0009653 | anatomical structure morphogenesis |
| GO:0010614 | negative regulation of cardiac muscle hypertrophy |
| GO:0010718 | positive regulation of epithelial to mesenchymal transition |
| GO:0010862 | positive regulation of pathway-restricted SMAD protein phosphorylation |
| GO:0014033 | neural crest cell differentiation |
| GO:0016579 | protein deubiquitination |
| GO:0017015 | regulation of transforming growth factor beta receptor signaling pathway |
| GO:0030154 | cell differentiation |
| GO:0030308 | negative regulation of cell growth |
| GO:0030509 | BMP signaling pathway |
| GO:0030511 | positive regulation of transforming growth factor beta receptor signaling pathway |
| GO:0030513 | positive regulation of BMP signaling pathway |
| GO:0030514 | negative regulation of BMP signaling pathway |
| GO:0032444 | activin responsive factor complex |
| GO:0032525 | somite rostral/caudal axis specification |
| GO:0032909 | regulation of transforming growth factor beta2 production |
| GO:0033686 | positive regulation of luteinizing hormone secretion |
| GO:0035019 | somatic stem cell population maintenance |
| GO:0035556 | intracellular signal transduction |
| GO:0036302 | atrioventricular canal development |
| GO:0042118 | endothelial cell activation |
| GO:0042733 | embryonic digit morphogenesis |
| GO:0042802 | identical protein binding |
| GO:0042803 | protein homodimerization activity |
| GO:0043199 | sulfate binding |
| GO:0045892 | negative regulation of transcription, DNA-templated |
| GO:0045893 | positive regulation of transcription, DNA-templated |
| GO:0045944 | positive regulation of transcription by RNA polymerase II |
| GO:0046872 | metal ion binding |
| GO:0046881 | positive regulation of follicle-stimulating hormone secretion |
| GO:0048382 | mesendoderm development |
| GO:0048589 | developmental growth |
| GO:0048663 | neuron fate commitment |
| GO:0048733 | sebaceous gland development |
| GO:0048859 | formation of anatomical boundary |
| GO:0051098 | regulation of binding |
| GO:0051571 | positive regulation of histone H3-K4 methylation |
| GO:0051797 | regulation of hair follicle development |
| GO:0060065 | uterus development |
| GO:0060391 | positive regulation of SMAD protein signal transduction |
| GO:0060395 | SMAD protein signal transduction |
| GO:0060412 | ventricular septum morphogenesis |
| GO:0060548 | negative regulation of cell death |
| GO:0060956 | endocardial cell differentiation |
| GO:0061040 | female gonad morphogenesis |
| GO:0062009 | secondary palate development |
| GO:0070102 | interleukin-6-mediated signaling pathway |
| GO:0070373 | negative regulation of ERK1 and ERK2 cascade |
| GO:0070411 | I-SMAD binding |
| GO:0070412 | R-SMAD binding |
| GO:0071141 | SMAD protein complex |
| GO:0071144 | heteromeric SMAD protein complex |
| GO:0071559 | response to transforming growth factor beta |
| GO:0071773 | cellular response to BMP stimulus |
| GO:0072133 | metanephric mesenchyme morphogenesis |
| GO:0072134 | nephrogenic mesenchyme morphogenesis |
| GO:0072520 | seminiferous tubule development |
| GO:1901522 | positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus |
| GO:1902895 | positive regulation of pri-miRNA transcription by RNA polymerase II |
| GO:1905305 | negative regulation of cardiac myofibril assembly |
| GO:2000617 | positive regulation of histone H3-K9 acetylation |