| GO | Name |
| GO:0000165 | MAPK cascade |
| GO:0000785 | chromatin |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific |
| GO:0001657 | ureteric bud development |
| GO:0001710 | mesodermal cell fate commitment |
| GO:0002051 | osteoblast fate commitment |
| GO:0003161 | cardiac conduction system development |
| GO:0003700 | DNA-binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0005637 | nuclear inner membrane |
| GO:0005654 | nucleoplasm |
| GO:0005737 | cytoplasm |
| GO:0005829 | cytosol |
| GO:0006468 | protein phosphorylation |
| GO:0006954 | inflammatory response |
| GO:0007165 | signal transduction |
| GO:0007179 | transforming growth factor beta receptor signaling pathway |
| GO:0007183 | SMAD protein complex assembly |
| GO:0007276 | gamete generation |
| GO:0008285 | negative regulation of cell population proliferation |
| GO:0009653 | anatomical structure morphogenesis |
| GO:0009880 | embryonic pattern specification |
| GO:0010628 | positive regulation of gene expression |
| GO:0016021 | integral component of membrane |
| GO:0016579 | protein deubiquitination |
| GO:0017151 | DEAD/H-box RNA helicase binding |
| GO:0019901 | protein kinase binding |
| GO:0030154 | cell differentiation |
| GO:0030509 | BMP signaling pathway |
| GO:0030514 | negative regulation of BMP signaling pathway |
| GO:0030901 | midbrain development |
| GO:0030902 | hindbrain development |
| GO:0031053 | primary miRNA processing |
| GO:0032991 | protein-containing complex |
| GO:0042592 | homeostatic process |
| GO:0042802 | identical protein binding |
| GO:0045669 | positive regulation of osteoblast differentiation |
| GO:0045944 | positive regulation of transcription by RNA polymerase II |
| GO:0046872 | metal ion binding |
| GO:0051148 | negative regulation of muscle cell differentiation |
| GO:0051216 | cartilage development |
| GO:0060038 | cardiac muscle cell proliferation |
| GO:0060348 | bone development |
| GO:0060395 | SMAD protein signal transduction |
| GO:0061036 | positive regulation of cartilage development |
| GO:0070410 | co-SMAD binding |
| GO:0070411 | I-SMAD binding |
| GO:0070878 | primary miRNA binding |
| GO:0071141 | SMAD protein complex |
| GO:0071144 | heteromeric SMAD protein complex |
| GO:0071407 | cellular response to organic cyclic compound |
| GO:1901522 | positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus |
| GO:1902895 | positive regulation of pri-miRNA transcription by RNA polymerase II |
| GO:1903672 | positive regulation of sprouting angiogenesis |