| GO | Name |
| GO:0000122 | negative regulation of transcription by RNA polymerase II |
| GO:0000785 | chromatin |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0001227 | DNA-binding transcription repressor activity, RNA polymerase II-specific |
| GO:0003690 | double-stranded DNA binding |
| GO:0005634 | nucleus |
| GO:0005654 | nucleoplasm |
| GO:0006325 | chromatin organization |
| GO:0006338 | chromatin remodeling |
| GO:0006357 | regulation of transcription by RNA polymerase II |
| GO:0016032 | viral process |
| GO:0016363 | nuclear matrix |
| GO:0016604 | nuclear body |
| GO:0016605 | PML body |
| GO:0043565 | sequence-specific DNA binding |