| GO | Name |
| GO:0000122 | negative regulation of transcription by RNA polymerase II |
| GO:0001658 | branching involved in ureteric bud morphogenesis |
| GO:0001701 | in utero embryonic development |
| GO:0001709 | cell fate determination |
| GO:0001843 | neural tube closure |
| GO:0003007 | heart morphogenesis |
| GO:0005113 | patched binding |
| GO:0005119 | smoothened binding |
| GO:0005634 | nucleus |
| GO:0005886 | plasma membrane |
| GO:0005901 | caveola |
| GO:0007224 | smoothened signaling pathway |
| GO:0007346 | regulation of mitotic cell cycle |
| GO:0007420 | brain development |
| GO:0008158 | hedgehog receptor activity |
| GO:0008201 | heparin binding |
| GO:0008589 | regulation of smoothened signaling pathway |
| GO:0009612 | response to mechanical stimulus |
| GO:0009887 | animal organ morphogenesis |
| GO:0009953 | dorsal/ventral pattern formation |
| GO:0009957 | epidermal cell fate specification |
| GO:0010157 | response to chlorate |
| GO:0010875 | positive regulation of cholesterol efflux |
| GO:0014069 | postsynaptic density |
| GO:0015485 | cholesterol binding |
| GO:0016021 | integral component of membrane |
| GO:0016485 | protein processing |
| GO:0021522 | spinal cord motor neuron differentiation |
| GO:0021532 | neural tube patterning |
| GO:0021997 | neural plate axis specification |
| GO:0030326 | embryonic limb morphogenesis |
| GO:0030332 | cyclin binding |
| GO:0030496 | midbody |
| GO:0030666 | endocytic vesicle membrane |
| GO:0030850 | prostate gland development |
| GO:0032355 | response to estradiol |
| GO:0032526 | response to retinoic acid |
| GO:0032880 | regulation of protein localization |
| GO:0035108 | limb morphogenesis |
| GO:0035137 | hindlimb morphogenesis |
| GO:0040015 | negative regulation of multicellular organism growth |
| GO:0042493 | response to drug |
| GO:0042593 | glucose homeostasis |
| GO:0043231 | intracellular membrane-bounded organelle |
| GO:0043433 | negative regulation of DNA-binding transcription factor activity |
| GO:0043616 | keratinocyte proliferation |
| GO:0044294 | dendritic growth cone |
| GO:0044295 | axonal growth cone |
| GO:0044877 | protein-containing complex binding |
| GO:0045177 | apical part of cell |
| GO:0045606 | positive regulation of epidermal cell differentiation |
| GO:0045668 | negative regulation of osteoblast differentiation |
| GO:0045879 | negative regulation of smoothened signaling pathway |
| GO:0045893 | positive regulation of transcription, DNA-templated |
| GO:0048471 | perinuclear region of cytoplasm |
| GO:0048568 | embryonic organ development |
| GO:0048745 | smooth muscle tissue development |
| GO:0050680 | negative regulation of epithelial cell proliferation |
| GO:0051782 | negative regulation of cell division |
| GO:0060037 | pharyngeal system development |
| GO:0060170 | ciliary membrane |
| GO:0060603 | mammary gland duct morphogenesis |
| GO:0060644 | mammary gland epithelial cell differentiation |
| GO:0060831 | smoothened signaling pathway involved in dorsal/ventral neural tube patterning |
| GO:0061005 | cell differentiation involved in kidney development |
| GO:0061053 | somite development |
| GO:0071397 | cellular response to cholesterol |
| GO:0071679 | commissural neuron axon guidance |
| GO:0072203 | cell proliferation involved in metanephros development |
| GO:0072205 | metanephric collecting duct development |
| GO:0072659 | protein localization to plasma membrane |
| GO:0097108 | hedgehog family protein binding |
| GO:0097421 | liver regeneration |