| GO | Name |
| GO:0000122 | negative regulation of transcription by RNA polymerase II |
| GO:0000785 | chromatin |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0000987 | cis-regulatory region sequence-specific DNA binding |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific |
| GO:0001657 | ureteric bud development |
| GO:0001701 | in utero embryonic development |
| GO:0001706 | endoderm formation |
| GO:0001707 | mesoderm formation |
| GO:0003682 | chromatin binding |
| GO:0003690 | double-stranded DNA binding |
| GO:0003700 | DNA-binding transcription factor activity |
| GO:0005160 | transforming growth factor beta receptor binding |
| GO:0005634 | nucleus |
| GO:0005654 | nucleoplasm |
| GO:0005667 | transcription regulator complex |
| GO:0005737 | cytoplasm |
| GO:0005829 | cytosol |
| GO:0007179 | transforming growth factor beta receptor signaling pathway |
| GO:0007182 | common-partner SMAD protein phosphorylation |
| GO:0007183 | SMAD protein complex assembly |
| GO:0007352 | zygotic specification of dorsal/ventral axis |
| GO:0007369 | gastrulation |
| GO:0008134 | transcription factor binding |
| GO:0008285 | negative regulation of cell population proliferation |
| GO:0009653 | anatomical structure morphogenesis |
| GO:0009749 | response to glucose |
| GO:0009791 | post-embryonic development |
| GO:0009952 | anterior/posterior pattern specification |
| GO:0010628 | positive regulation of gene expression |
| GO:0010718 | positive regulation of epithelial to mesenchymal transition |
| GO:0016579 | protein deubiquitination |
| GO:0017015 | regulation of transforming growth factor beta receptor signaling pathway |
| GO:0019902 | phosphatase binding |
| GO:0023019 | signal transduction involved in regulation of gene expression |
| GO:0030073 | insulin secretion |
| GO:0030154 | cell differentiation |
| GO:0030324 | lung development |
| GO:0030325 | adrenal gland development |
| GO:0030509 | BMP signaling pathway |
| GO:0030512 | negative regulation of transforming growth factor beta receptor signaling pathway |
| GO:0030513 | positive regulation of BMP signaling pathway |
| GO:0031016 | pancreas development |
| GO:0031053 | primary miRNA processing |
| GO:0031625 | ubiquitin protein ligase binding |
| GO:0032444 | activin responsive factor complex |
| GO:0032924 | activin receptor signaling pathway |
| GO:0032991 | protein-containing complex |
| GO:0034713 | type I transforming growth factor beta receptor binding |
| GO:0035019 | somatic stem cell population maintenance |
| GO:0035265 | organ growth |
| GO:0035556 | intracellular signal transduction |
| GO:0038092 | nodal signaling pathway |
| GO:0042060 | wound healing |
| GO:0045165 | cell fate commitment |
| GO:0045892 | negative regulation of transcription, DNA-templated |
| GO:0045893 | positive regulation of transcription, DNA-templated |
| GO:0045944 | positive regulation of transcription by RNA polymerase II |
| GO:0046332 | SMAD binding |
| GO:0046872 | metal ion binding |
| GO:0048156 | tau protein binding |
| GO:0048340 | paraxial mesoderm morphogenesis |
| GO:0048617 | embryonic foregut morphogenesis |
| GO:0048701 | embryonic cranial skeleton morphogenesis |
| GO:0051098 | regulation of binding |
| GO:0060039 | pericardium development |
| GO:0060395 | SMAD protein signal transduction |
| GO:0062009 | secondary palate development |
| GO:0070410 | co-SMAD binding |
| GO:0070411 | I-SMAD binding |
| GO:0070412 | R-SMAD binding |
| GO:0070723 | response to cholesterol |
| GO:0071141 | SMAD protein complex |
| GO:0071144 | heteromeric SMAD protein complex |
| GO:0097718 | disordered domain specific binding |
| GO:1900224 | positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry |