Entity Details

Primary name SCN5A
Entity type gene
Source Source Link

Details

PrimaryID6331
RefseqGeneNG_008934
SymbolSCN5A
Namesodium voltage-gated channel alpha subunit 5
Chromosome3
Location3p22.2
TaxID9606
Statuslive
SourceGenomegenomic
SourceOriginnatural
CreationDate1995-05-11
ModificationDate2021-06-22

Ontological Relatives

UniProt IDsSCN5A_HUMAN

GO terms

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GOName
GO:0001518 voltage-gated sodium channel complex
GO:0002027 regulation of heart rate
GO:0003161 cardiac conduction system development
GO:0003231 cardiac ventricle development
GO:0003360 brainstem development
GO:0005244 voltage-gated ion channel activity
GO:0005248 voltage-gated sodium channel activity
GO:0005516 calmodulin binding
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005783 endoplasmic reticulum
GO:0005886 plasma membrane
GO:0005901 caveola
GO:0006814 sodium ion transport
GO:0009986 cell surface
GO:0010765 positive regulation of sodium ion transport
GO:0014704 intercalated disc
GO:0014894 response to denervation involved in regulation of muscle adaptation
GO:0016021 integral component of membrane
GO:0016328 lateral plasma membrane
GO:0017134 fibroblast growth factor binding
GO:0019228 neuronal action potential
GO:0019899 enzyme binding
GO:0019901 protein kinase binding
GO:0019904 protein domain specific binding
GO:0021537 telencephalon development
GO:0021549 cerebellum development
GO:0030018 Z disc
GO:0030315 T-tubule
GO:0030506 ankyrin binding
GO:0031625 ubiquitin protein ligase binding
GO:0035725 sodium ion transmembrane transport
GO:0042383 sarcolemma
GO:0042475 odontogenesis of dentin-containing tooth
GO:0044325 transmembrane transporter binding
GO:0045760 positive regulation of action potential
GO:0048471 perinuclear region of cytoplasm
GO:0050679 positive regulation of epithelial cell proliferation
GO:0050998 nitric-oxide synthase binding
GO:0051899 membrane depolarization
GO:0060048 cardiac muscle contraction
GO:0060307 regulation of ventricular cardiac muscle cell membrane repolarization
GO:0060371 regulation of atrial cardiac muscle cell membrane depolarization
GO:0060372 regulation of atrial cardiac muscle cell membrane repolarization
GO:0060373 regulation of ventricular cardiac muscle cell membrane depolarization
GO:0061337 cardiac conduction
GO:0071277 cellular response to calcium ion
GO:0086002 cardiac muscle cell action potential involved in contraction
GO:0086004 regulation of cardiac muscle cell contraction
GO:0086005 ventricular cardiac muscle cell action potential
GO:0086006 voltage-gated sodium channel activity involved in cardiac muscle cell action potential
GO:0086010 membrane depolarization during action potential
GO:0086012 membrane depolarization during cardiac muscle cell action potential
GO:0086014 atrial cardiac muscle cell action potential
GO:0086015 SA node cell action potential
GO:0086016 AV node cell action potential
GO:0086043 bundle of His cell action potential
GO:0086045 membrane depolarization during AV node cell action potential
GO:0086046 membrane depolarization during SA node cell action potential
GO:0086047 membrane depolarization during Purkinje myocyte cell action potential
GO:0086048 membrane depolarization during bundle of His cell action potential
GO:0086060 voltage-gated sodium channel activity involved in AV node cell action potential
GO:0086061 voltage-gated sodium channel activity involved in bundle of His cell action potential
GO:0086062 voltage-gated sodium channel activity involved in Purkinje myocyte action potential
GO:0086063 voltage-gated sodium channel activity involved in SA node cell action potential
GO:0086067 AV node cell to bundle of His cell communication
GO:0086091 regulation of heart rate by cardiac conduction
GO:0097110 scaffold protein binding
GO:0098912 membrane depolarization during atrial cardiac muscle cell action potential
GO:1902305 regulation of sodium ion transmembrane transport

Diseases

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Disease IDSourceNameDescription
601144 OMIMBrugada syndrome 1 (BRGDA1)A tachyarrhythmia characterized by right bundle branch block and ST segment elevation on an electrocardiogram (ECG). It can cause the ventricles to beat so fast that the blood is prevented from circulating efficiently in the body. When this situation occurs, the individual will faint and may die in a few minutes if the heart is not reset. The disease is caused by variants affecting the gene represented in this entry.
603830 OMIMLong QT syndrome 3 (LQT3)A heart disorder characterized by a prolonged QT interval on the ECG and polymorphic ventricular arrhythmias. They cause syncope and sudden death in response to exercise or emotional stress, and can present with a sentinel event of sudden cardiac death in infancy. The disease is caused by variants affecting the gene represented in this entry.
113900 OMIMProgressive familial heart block 1A (PFHB1A)A cardiac bundle branch disorder characterized by progressive alteration of cardiac conduction through the His-Purkinje system, with a pattern of a right bundle-branch block and/or left anterior hemiblock occurring individually or together. It leads to complete atrio-ventricular block causing syncope and sudden death. The disease is caused by variants affecting the gene represented in this entry.
601154 OMIMCardiomyopathy, dilated 1E (CMD1E)A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. The disease is caused by variants affecting the gene represented in this entry.
614022 OMIMAtrial fibrillation, familial, 10 (ATFB10)A familial form of atrial fibrillation, a common sustained cardiac rhythm disturbance. Atrial fibrillation is characterized by disorganized atrial electrical activity and ineffective atrial contraction promoting blood stasis in the atria and reduces ventricular filling. It can result in palpitations, syncope, thromboembolic stroke, and congestive heart failure. The disease is caused by variants affecting the gene represented in this entry.
608567 OMIMSick sinus syndrome 1 (SSS1)The term 'sick sinus syndrome' encompasses a variety of conditions caused by sinus node dysfunction. The most common clinical manifestations are syncope, presyncope, dizziness, and fatigue. Electrocardiogram typically shows sinus bradycardia, sinus arrest, and/or sinoatrial block. Episodes of atrial tachycardias coexisting with sinus bradycardia ('tachycardia-bradycardia syndrome') are also common in this disorder. SSS occurs most often in the elderly associated with underlying heart disease or previous cardiac surgery, but can also occur in the fetus, infant, or child without heart disease or other contributing factors. SSS1 onset is in utero, infancy, or early childhood. The disease is caused by variants affecting the gene represented in this entry.
603829 OMIMFamilial paroxysmal ventricular fibrillation 1 (VF1)A cardiac arrhythmia marked by fibrillary contractions of the ventricular muscle due to rapid repetitive excitation of myocardial fibers without coordinated contraction of the ventricle and by absence of atrial activity. The disease is caused by variants affecting the gene represented in this entry.
108770 OMIMAtrial standstill 1 (ATRST1)A rare arrhythmia characterized by the absence of electrical and mechanical activity in the atria. Electrocardiographically, it is characterized by bradycardia, the absence of P waves, and a junctional narrow complex escape rhythm. The disease may be caused by variants affecting distinct genetic loci, including the gene represented in this entry. A mutation in SCN5A has been detected in combination with a rare GJA5 genotype in a large family with atrial standstill.
272120 OMIMSudden infant death syndrome (SIDS)SIDS is the sudden death of an infant younger than 1 year that remains unexplained after a thorough case investigation, including performance of a complete autopsy, examination of the death scene, and review of clinical history. Pathophysiologic mechanisms for SIDS may include respiratory dysfunction, cardiac dysrhythmias, cardiorespiratory instability, and inborn errors of metabolism, but definitive pathogenic mechanisms precipitating an infant sudden death remain elusive. Disease susceptibility is associated with variants affecting the gene represented in this entry.

Interactions

39 interactions

InteractorPartnerSourcesPublicationsLink
SCN5ASNTG2HPRD, MINT12429735 details
SCN5ARGS2HPRD, IntAct16169070 details
SCN5ACALM1BioGRID, DIP, I2D, UniProt11807557 15746172 16505387 21167176 22331908 22705208 25232683 details
SCN5ACALM2DIP, I2D, UniProt11807557 16505387 21167176 22331908 22705208 25232683 details
SCN5ACALM3DIP, I2D, UniProt11807557 16505387 21167176 22331908 22705208 25232683 details
SCN5APTPN3MINT16930557 details
SCN5APRMT1MINT23912080 details
SCN5APRMT3MINT23912080 details
SCN5APRMT5MINT23912080 details
SCN5ACAMK2Dbhf-ucl22514276 details
SCN5ADLG1HPRD, MINT16637659 24550280 details
SCN5AEMC9BioGRID, IntAct32296183 details
SCN5ABANPBioGRID, IntAct32296183 details
SCN5ATEKT4BioGRID, IntAct32296183 details
SCN5AZMYND19BioGRID, IntAct32296183 details
SCN5ASNTA1BioGRID, DIP, HPRD18591664 9412493 details
SCN5AANK3DIP19805355 details
SCN5AFGF12DIP22705208 details
SCN5ANEDD4BioGRID15217910 31614475 details
SCN5AWWP2BioGRID15548568 details
SCN5ACDK2BioGRID23421998 details
SCN5ACRYABBioGRID26961874 details
SCN5ANEDD4LBioGRID, HPRD15217910 15548568 28296171 31900993 details
SCN5AANKS1ABioGRID32296183 details
SCN5AGPD1LUniProt19666841 details
SCN5ASNTB2BioGRID, HPRD9412493 details
SCN5ASNTB1BioGRID, HPRD9412493 details
SCN5ACAV3BioGRID17060380 details
SCN5AGANBioGRID26460568 details
SCN5ACBLHPRD8621719 details
SCN5ADLG2HPRD16637659 details
SCN5ADLG4HPRD16637659 details
SCN5ASCN5AHPRD16637659 details
SCN5ADLG3HPRD16637659 details
SCN5ARGS3HPRD16637659 details
SCN5AALBBioGRID, IntAct15174051 details
SCN5AFGF13DIP22705208 details
SCN5APINK1BioGRID31300519 details
SCN5ASMARCA2BioGRID31753913 details