Entity Details

Primary name HOXD13
Entity type gene
Source Source Link

Details

PrimaryID3239
RefseqGeneNG_008137
SymbolHOXD13
Namehomeobox D13
Chromosome2
Location2q31.1
TaxID9606
Statuslive
SourceGenomegenomic
SourceOriginnatural
CreationDate1993-02-18
ModificationDate2021-06-11

Ontological Relatives

UniProt IDsHXD13_HUMAN

GO terms

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GOName
GO:0000785 chromatin
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001501 skeletal system development
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0003700 DNA-binding transcription factor activity
GO:0005654 nucleoplasm
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription by RNA polymerase II
GO:0007275 multicellular organism development
GO:0009952 anterior/posterior pattern specification
GO:0030539 male genitalia development
GO:0033574 response to testosterone
GO:0042127 regulation of cell population proliferation
GO:0042733 embryonic digit morphogenesis
GO:0045944 positive regulation of transcription by RNA polymerase II
GO:0048619 embryonic hindgut morphogenesis
GO:0060527 prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis
GO:0060571 morphogenesis of an epithelial fold
GO:0060602 branch elongation of an epithelium
GO:0060687 regulation of branching involved in prostate gland morphogenesis
GO:1990837 sequence-specific double-stranded DNA binding

Diseases

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Disease IDSourceNameDescription
113200 OMIMBrachydactyly D (BDD)A form of brachydactyly. Brachydactyly defines a group of inherited malformations characterized by shortening of the digits due to abnormal development of the phalanges and/or the metacarpals. Brachydactyly type D is characterized by short and broad terminal phalanges of the thumbs and big toes. The disease is caused by variants affecting the gene represented in this entry.
113300 OMIMBrachydactyly E1 (BDE1)A form of brachydactyly. Brachydactyly defines a group of inherited malformations characterized by shortening of the digits due to abnormal development of the phalanges and/or the metacarpals. Brachydactyly type E is characterized by shortening of the fingers mainly in the metacarpals and metatarsals. Wide variability in the number of digits affected occurs from person to person, even in the same family. Some individuals are moderately short of stature. Brachydactyly type E1 is characterized by shortening limited to fourth metacarpals and/or metatarsals. The disease is caused by variants affecting the gene represented in this entry.
186000 OMIMSynpolydactyly 1 (SPD1)Limb malformation that shows a characteristic manifestation in both hands and feet. This condition is inherited as an autosomal dominant trait with reduced penetrance. The disease is caused by variants affecting the gene represented in this entry.
186300 OMIMSyndactyly 5 (SDTY5)A form of syndactyly, a congenital anomaly of the hand or foot marked by persistence of the webbing between adjacent digits that are more or less completely attached. The characteristic finding in SDTY5 is the presence of an associated metacarpal and metatarsal fusion. The metacarpals and metatarsals most commonly fused are the 4th and 5th or the 3rd and 4th. Soft tissue syndactyly usually affects the 3rd and 4th fingers and the 2nd and 3rd toes. The disease is caused by variants affecting the gene represented in this entry.
610713 OMIMBrachydactyly-syndactyly syndrome (BDSD)A disease characterized by generalized shortening of the hands and feet, broad and short distal phalanges of the thumbs, and cutaneous syndactyly of toes 2 and 3. The limb phenotypes observed in this syndrome overlap those of brachydactyly types A4, D, E and syndactyly type 1. The disease is caused by variants affecting the gene represented in this entry.
610713 OMIMBrachydactyly-syndactyly syndrome (BDSD)A disease characterized by generalized shortening of the hands and feet, broad and short distal phalanges of the thumbs, and cutaneous syndactyly of toes 2 and 3. The limb phenotypes observed in this syndrome overlap those of brachydactyly types A4, D, E and syndactyly type 1. The disease is caused by variants affecting the gene represented in this entry.
192350 OMIMVACTERL association (VACTERL)VACTERL is an acronym for vertebral anomalies, anal atresia, congenital cardiac disease, tracheoesophageal fistula, renal anomalies, radial dysplasia, and other limb defects. The gene represented in this entry may be involved in disease pathogenesis.

Interactions

48 interactions

InteractorPartnerSourcesPublicationsLink
HOXD13CREBBPBioGRID11585930 details
HOXD13HAND2BioGRID20386744 details
HOXD13CDC27BioGRID27097363 details
HOXD13ANAPC4BioGRID27097363 details
HOXD13ANAPC10BioGRID27097363 details
HOXD13CDC20BioGRID27097363 details
HOXD13RAE1BioGRID27097363 details
HOXD13FZR1BioGRID27097363 details
HOXD13CREB1BioGRID, MINT25609649 details
HOXD13FOSBioGRID, MINT25609649 details
HOXD13FOXA1BioGRID, MINT25609649 details
HOXD13FOXA2BioGRID, MINT25609649 details
HOXD13FOXA3BioGRID, MINT25609649 details
HOXD13FOXB1BioGRID, MINT25609649 details
HOXD13FOXC1BioGRID, MINT25609649 details
HOXD13FOXC2BioGRID, MINT25609649 details
HOXD13FOXE1BioGRID, MINT25609649 details
HOXD13FOXF1BioGRID, MINT25609649 details
HOXD13FOXI2BioGRID, MINT25609649 details
HOXD13FOXJ2BioGRID, MINT25609649 details
HOXD13FOXN1BioGRID, MINT25609649 details
HOXD13FOXQ1BioGRID, MINT25609649 details
HOXD13JUNBioGRID, MINT25609649 details
HOXD13RBPJBioGRID, MINT25609649 details
HOXD13IL13RA2BioGRID, IntAct28514442 details
HOXD13SLC2A12BioGRID, IntAct28514442 details
HOXD13F9BioGRID, IntAct28514442 details
HOXD13KLK15BioGRID26186194 details
HOXD13HLA-DPA1BioGRID26186194 details
HOXD13GPR55BioGRID26186194 details
HOXD13PLAURBioGRID26186194 details
HOXD13A4GNTBioGRID26186194 details
HOXD13CARD8BioGRID26186194 details
HOXD13HERC2BioGRID26186194 details
HOXD13NFATC1BioGRID25609649 details
HOXD13TEAD2BioGRID25609649 details
HOXD13FOXD3BioGRID25609649 details
HOXD13FOXG1BioGRID25609649 details
HOXD13FOXK2BioGRID25609649 details
HOXD13FOXO1BioGRID25609649 details
HOXD13FOXP1BioGRID25609649 details
HOXD13FOXP3BioGRID25609649 details
HOXD13FOXR1BioGRID25609649 details
HOXD13FOXS1BioGRID25609649 details
HOXD13CICBioGRID29844126 details
HOXD13USP44BioGRID32076268 details
HOXD13COILBioGRID34079125 details
HOXD13ZNF330BioGRID34079125 details