Entity Details

Primary name SMHD1_HUMAN
Entity type UniProt
Source Source Link

Details

AccessionA6NHR9
EntryNameSMHD1_HUMAN
FullNameStructural maintenance of chromosomes flexible hinge domain-containing protein 1
TaxID9606
Evidenceevidence at protein level
Length2005
SequenceStatuscomplete
DateCreated2008-04-29
DateModified2021-06-02

Ontological Relatives

GenesSMCHD1

GO terms

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GOName
GO:0001740 Barr body
GO:0003677 DNA binding
GO:0005524 ATP binding
GO:0006302 double-strand break repair
GO:0009048 dosage compensation by inactivation of X chromosome
GO:0016887 ATP hydrolysis activity
GO:0035861 site of double-strand break
GO:0042803 protein homodimerization activity
GO:0043584 nose development
GO:0045739 positive regulation of DNA repair
GO:0060820 inactivation of X chromosome by heterochromatin assembly
GO:0060821 inactivation of X chromosome by DNA methylation
GO:0070868 heterochromatin organization involved in chromatin silencing
GO:2000042 negative regulation of double-strand break repair via homologous recombination
GO:2001034 positive regulation of double-strand break repair via nonhomologous end joining

Subcellular Location

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Subcellular Location
Chromosome

Domains

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DomainNameCategoryType
IPR010935 SMCs flexible hingeDomainDomain
IPR036277 SMCs flexible hinge superfamilyFamilyHomologous superfamily
IPR036890 Histidine kinase/HSP90-like ATPase superfamilyFamilyHomologous superfamily
IPR038892 Structural maintenance of chromosomes flexible hinge domain-containing protein 1FamilyFamily

Diseases

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Disease IDSourceNameDescription
603457 OMIMBosma arhinia microphthalmia syndrome (BAMS)An autosomal dominant syndrome characterized by severe hypoplasia of the nose, palatal abnormalities, hypoplasia of the eyes, sensory abnormalities of taste and smell, hypogonadotropic hypogonadism with cryptorchidism, and normal intelligence. The disease is caused by variants affecting the gene represented in this entry.
158901 OMIMFacioscapulohumeral muscular dystrophy 2 (FSHD2)A degenerative muscle disease characterized by slowly progressive weakness of the muscles of the face, upper-arm, and shoulder girdle. The onset of symptoms usually occurs in the first or second decade of life. Affected individuals usually present with impairment of upper extremity elevation. This tends to be followed by facial weakness, primarily involving the orbicularis oris and orbicularis oculi muscles. The disease is caused by variants affecting the gene represented in this entry. SMCHD1 mutations lead to DUX4 expression in somatic tissues, including muscle cells, when an haplotype on chromosome 4 is permissive for DUX4 expression (PubMed:23143600). Ectopic expression of DUX4 in skeletal muscle activates the expression of stem cell and germline genes, and, when overexpressed in somatic cells, DUX4 can ultimately lead to cell death (PubMed:23143600). FSHD2 and FSHD1 share a common pathophysiological pathway in which the FSHD2 gene SMCHD1 can act as a modifier for disease severity in families affected by FSHD1 (PubMed:24075187, PubMed:25370034).