| GO | Name |
| GO:0000122 | negative regulation of transcription by RNA polymerase II |
| GO:0000785 | chromatin |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0003700 | DNA-binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0005654 | nucleoplasm |
| GO:0005813 | centrosome |
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0006357 | regulation of transcription by RNA polymerase II |
| GO:0010470 | regulation of gastrulation |
| GO:0038092 | nodal signaling pathway |
| GO:0045666 | positive regulation of neuron differentiation |
| GO:0060041 | retina development in camera-type eye |
| GO:1990837 | sequence-specific double-stranded DNA binding |