Entity Details

Primary name SETD2_HUMAN
Entity type UniProt
Source Source Link

Details

AccessionQ9BYW2
EntryNameSETD2_HUMAN
FullNameHistone-lysine N-methyltransferase SETD2
TaxID9606
Evidenceevidence at protein level
Length2564
SequenceStatuscomplete
DateCreated2006-10-17
DateModified2021-06-02

Ontological Relatives

GenesSETD2

GO terms

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GOName
GO:0001525 angiogenesis
GO:0001763 morphogenesis of a branching structure
GO:0001843 neural tube closure
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0006298 mismatch repair
GO:0006355 regulation of transcription, DNA-templated
GO:0006368 transcription elongation from RNA polymerase II promoter
GO:0010569 regulation of double-strand break repair via homologous recombination
GO:0010793 regulation of mRNA export from nucleus
GO:0016032 viral process
GO:0016279 protein-lysine N-methyltransferase activity
GO:0018023 peptidyl-lysine trimethylation
GO:0018024 histone-lysine N-methyltransferase activity
GO:0018026 peptidyl-lysine monomethylation
GO:0030900 forebrain development
GO:0032465 regulation of cytokinesis
GO:0032727 positive regulation of interferon-alpha production
GO:0034340 response to type I interferon
GO:0034728 nucleosome organization
GO:0035441 cell migration involved in vasculogenesis
GO:0035987 endodermal cell differentiation
GO:0043014 alpha-tubulin binding
GO:0046872 metal ion binding
GO:0046975 histone methyltransferase activity (H3-K36 specific)
GO:0048332 mesoderm morphogenesis
GO:0048701 embryonic cranial skeleton morphogenesis
GO:0048863 stem cell differentiation
GO:0048864 stem cell development
GO:0051607 defense response to virus
GO:0060039 pericardium development
GO:0060669 embryonic placenta morphogenesis
GO:0060977 coronary vasculature morphogenesis
GO:0097198 histone H3-K36 trimethylation
GO:0097676 histone H3-K36 dimethylation
GO:1902850 microtubule cytoskeleton organization involved in mitosis
GO:1905634 regulation of protein localization to chromatin

Subcellular Location

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Subcellular Location
Chromosome
Nucleus

Domains

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DomainNameCategoryType
IPR001202 WW domainDomainDomain
IPR001214 SET domainDomainDomain
IPR003616 Post-SET domainDomainDomain
IPR006560 AWS domainDomainDomain
IPR013257 Set2 Rpb1 interacting domainDomainDomain
IPR035441 TFIIS/LEDGF domain superfamilyFamilyHomologous superfamily
IPR036020 WW domain superfamilyFamilyHomologous superfamily
IPR038190 Set2 Rpb1 interacting domain superfamilyFamilyHomologous superfamily
IPR042294 Histone-lysine N-methyltransferase SETD2, animalFamilyFamily
IPR044437 SETD2/Set2, SET domainDomainDomain

Diseases

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Disease IDSourceNameDescription
613065 OMIMLeukemia, acute lymphoblastic, 3 (ALL3)A subtype of acute leukemia, a cancer of the white blood cells. Acute lymphoblastic anemia is a malignant disease of bone marrow and the most common malignancy diagnosed in children. The malignant cells are lymphoid precursor cells (lymphoblasts) that are arrested in an early stage of development. The lymphoblasts replace the normal marrow elements, resulting in a marked decrease in the production of normal blood cells. Consequently, anemia, thrombocytopenia, and neutropenia occur to varying degrees. The lymphoblasts also proliferate in organs other than the marrow, particularly the liver, spleen, and lymphnodes. The disease may be caused by variants affecting distinct genetic loci, including the gene represented in this entry.
144700 OMIMRenal cell carcinoma (RCC)Renal cell carcinoma is a heterogeneous group of sporadic or hereditary carcinoma derived from cells of the proximal renal tubular epithelium. It is subclassified into clear cell renal carcinoma (non-papillary carcinoma), papillary renal cell carcinoma, chromophobe renal cell carcinoma, collecting duct carcinoma with medullary carcinoma of the kidney, and unclassified renal cell carcinoma. Clear cell renal cell carcinoma is the most common subtype. The disease may be caused by variants affecting the gene represented in this entry. Defects of SETD2 are associated with loss of DNA methylation at non-promoter regions (PubMed:23792563). SETD2 defects lead to aberrant and reduced nucleosome compaction and chromatin association of key replication proteins, such as MCM7 and DNA polymerase delta, leading to hinder replication fork progression and prevent loading of RAD51 homologous recombination repair factor at DNA breaks (PubMed:25728682).
616831 OMIMLuscan-Lumish syndrome (LLS)An autosomal dominant syndrome with a variable phenotype. Clinical features include macrocephaly, distinctive facial appearance, postnatal overgrowth, various degrees of learning difficulties, autism spectrum disorder, and intellectual disability. The disease may be caused by variants affecting the gene represented in this entry.
601626 OMIMLeukemia, acute myelogenous (AML)A subtype of acute leukemia, a cancer of the white blood cells. AML is a malignant disease of bone marrow characterized by maturational arrest of hematopoietic precursors at an early stage of development. Clonal expansion of myeloid blasts occurs in bone marrow, blood, and other tissue. Myelogenous leukemias develop from changes in cells that normally produce neutrophils, basophils, eosinophils and monocytes. The disease may be caused by variants affecting distinct genetic loci, including the gene represented in this entry.