Entity Details

Primary name SPTLC2
Entity type gene
Source Source Link

Details

PrimaryID9517
RefseqGeneNG_028282
SymbolSPTLC2
Nameserine palmitoyltransferase long chain base subunit 2
Chromosome14
Location14q24.3
TaxID9606
Statuslive
SourceGenomegenomic
SourceOriginnatural
CreationDate2000-08-01
ModificationDate2021-06-11

Ontological Relatives

UniProt IDsSPTC2_HUMAN

GO terms

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GOName
GO:0004758 serine C-palmitoyltransferase activity
GO:0005789 endoplasmic reticulum membrane
GO:0006686 sphingomyelin biosynthetic process
GO:0016021 integral component of membrane
GO:0017059 serine C-palmitoyltransferase complex
GO:0030148 sphingolipid biosynthetic process
GO:0030170 pyridoxal phosphate binding
GO:0046511 sphinganine biosynthetic process
GO:0046512 sphingosine biosynthetic process
GO:0046513 ceramide biosynthetic process
GO:0060612 adipose tissue development
GO:1904504 positive regulation of lipophagy

Diseases

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Disease IDSourceNameDescription
613640 OMIMNeuropathy, hereditary sensory and autonomic, 1C (HSAN1C)A form of hereditary sensory and autonomic neuropathy, a genetically and clinically heterogeneous group of disorders characterized by degeneration of dorsal root and autonomic ganglion cells, and by prominent sensory abnormalities with a variable degree of motor and autonomic dysfunction. The neurological phenotype is often complicated by severe infections, osteomyelitis, and amputations. HSAN1C symptoms include loss of touch and vibration in the feet, dysesthesia and severe panmodal sensory loss in the upper and lower limbs, distal lower limb sensory loss with ulceration and osteomyelitis, and distal muscle weakness. The disease is caused by variants affecting the gene represented in this entry. SPTLC2 disease mutations cause a shift in the substrate specificity of SPT resulting in the alternative use of L-alanine and L-glycine over its canonical substrate L-serine. This leads to the production of 1-deoxysphingolipids that cannot be correctly metabolized (PubMed:23658386).

Interactions

40 interactions

InteractorPartnerSourcesPublicationsLink
SPTLC2SPTSSBDIP19416851 details
SPTLC2SPTSSADIP19416851 details
SPTLC2SPTLC1DIP, HPRD10722674 19416851 details
SPTLC2NOTCH3BioGRID25356737 details
SPTLC2BCL6BioGRID, IntAct16147992 details
SPTLC2HSCBBioGRID, IntAct28380382 details
SPTLC2LRRTM1BioGRID, IntAct28514442 details
SPTLC2SPINT2BioGRID, IntAct26186194 28514442 details
SPTLC2EVA1CBioGRID, IntAct26186194 28514442 details
SPTLC2ROM1BioGRID, IntAct28514442 details
SPTLC2COQ9IntAct27499296 details
SPTLC2P2RY6BioGRID, IntAct30833792 details
SPTLC2UNC93B1BioGRID, IntAct30833792 details
SPTLC2ATAD3AUniProt22453275 details
SPTLC2ATG2AIntAct31412244 details
SPTLC2NRG1BioGRID26186194 details
SPTLC2P2RX4BioGRID26186194 details
SPTLC2FAM189A2BioGRID26186194 details
SPTLC2WBP1BioGRID26186194 details
SPTLC2NTRK1BioGRID25921289 details
SPTLC2HERC2BioGRID25476789 details
SPTLC2PTPRNBioGRID27432908 details
SPTLC2CFTRBioGRID26618866 details
SPTLC2WWOXBioGRID30619736 details
SPTLC2MYCBioGRID29467282 details
SPTLC2VIRMABioGRID29507755 details
SPTLC2EGFRBioGRID25754235 details
SPTLC2SLC15A3BioGRID30833792 details
SPTLC2CA9BioGRID28692057 details
SPTLC2PTPN5BioGRID28675297 details
SPTLC2LMBR1LBioGRID31073040 details
SPTLC2OTULINLBioGRID31056421 details
SPTLC2PLEKHA4BioGRID31091453 details
SPTLC2PRKAG3BioGRID31900314 details
SPTLC2BCAR1BioGRID33001583 details
SPTLC2FAM20CBioGRID32149426 details
SPTLC2RIN3BioGRID32552912 details
SPTLC2ATP2A1BioGRID34079125 details
SPTLC2DERL1BioGRID34079125 details
SPTLC2TRIM25BioGRID29117863 details